DNA Binding Motif

Accessions: PF0138.1 (JASPAR 2024)
Names: MYAATNNNNNNNGGC
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: phylogenetic
Length: 15
Consensus: mCAATsvgmgsmGGC
Weblogo:
PSSM: P0 A C G T
01 168 316 0 0 m
02 0 368 0 116 C
03 484 0 0 0 A
04 484 0 0 0 A
05 0 0 0 484 T
06 88 159 170 67 s
07 135 135 157 57 v
08 53 118 272 41 g
09 164 154 98 68 m
10 99 75 242 68 g
11 85 142 213 44 s
12 134 165 120 65 m
13 0 0 484 0 G
14 0 0 484 0 G
15 0 484 0 0 C
Binding Sites: PF0138.1.1
PF0138.1.10
PF0138.1.11
PF0138.1.12
PF0138.1.13
PF0138.1.14
PF0138.1.15
PF0138.1.16
PF0138.1.17
PF0138.1.18
PF0138.1.19
PF0138.1.2
PF0138.1.20
PF0138.1.3 / PF0138.1.9
PF0138.1.4
PF0138.1.5
PF0138.1.6
PF0138.1.7
PF0138.1.8
Publications: Xie X, Lu J, Kulbokas E.J, Golub T.R, Mootha V, Lindblad-Toh K, Lander E.S, Kellis M. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434:338-45 (2005). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.