DNA Binding Motif

Accessions: MA0547.1 (JASPAR 2018)
Names: skn-1
Organisms: Caenorhabditis elegans
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: ChIP-seq
Length: 15
Consensus: aAaATGATGAyAAww
Weblogo:
PSSM: P0 A C G T
01 190 43 62 23 a
02 237 12 39 30 A
03 209 24 55 30 a
04 268 0 16 34 A
05 32 36 26 224 T
06 0 17 301 0 G
07 265 35 5 13 A
08 20 0 0 298 T
09 0 0 318 0 G
10 318 0 0 0 A
11 31 179 22 86 y
12 249 0 28 41 A
13 240 0 0 78 A
14 139 16 21 142 w
15 92 37 53 136 w
Binding TFs: P34707
Binding Sites: MA0547.1.1
MA0547.1.10
MA0547.1.11
MA0547.1.12
MA0547.1.13
MA0547.1.14
MA0547.1.15
MA0547.1.16
MA0547.1.17
MA0547.1.18
MA0547.1.19
MA0547.1.2
MA0547.1.20
MA0547.1.3
MA0547.1.4
MA0547.1.5
MA0547.1.6
MA0547.1.7
MA0547.1.8
MA0547.1.9
Publications: Staab T.A, Griffen T.C, Corcoran C, Evgrafov O, Knowles J.A, Sieburth D. The conserved SKN-1/Nrf2 stress response pathway regulates synaptic function in Caenorhabditis elegans. PLoS genetics 9:e1003354 (2013). [Pubmed]

Disclaimer

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.