DNA Binding Motif

Accessions: PF0004.1 (JASPAR 2018)
Names: ACTAYRNNNCCCR
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: phylogenetic
Length: 13
Consensus: ACTACAwyTCCCA
Weblogo:
PSSM: P0 A C G T
01 2440 0 0 0 A
02 0 2440 0 0 C
03 0 0 0 2440 T
04 2440 0 0 0 A
05 0 2416 0 24 C
06 2188 0 252 0 A
07 1357 230 169 684 w
08 316 763 309 1052 y
09 94 141 70 2135 T
10 0 2440 0 0 C
11 0 2440 0 0 C
12 0 2440 0 0 C
13 1974 0 466 0 A
Binding Sites: PF0004.1.1
PF0004.1.5 / PF0004.1.17 / PF0004.1.10
PF0004.1.11
PF0004.1.19 / PF0004.1.12
PF0004.1.13
PF0004.1.14
PF0004.1.15
PF0004.1.16
PF0004.1.2 / PF0004.1.18
PF0004.1.20
PF0004.1.3
PF0004.1.4
PF0004.1.6 / PF0004.1.7
PF0004.1.8
PF0004.1.9
Publications: Xie X, Lu J, Kulbokas E.J, Golub T.R, Mootha V, Lindblad-Toh K, Lander E.S, Kellis M. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434:338-45 (2005). [Pubmed]

Disclaimer

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.