DNA Binding Motif

Accessions: MA0014.1 (JASPAR 2024)
Names: Pax5
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: COMPILED
Length: 20
Consensus: drvkcasygrwGcRkrrCsr
Weblogo:
PSSM: P0 A C G T
01 4 1 4 3 d
02 4 0 8 0 r
03 4 3 3 2 v
04 1 2 5 4 k
05 2 7 1 2 c
06 7 2 1 2 a
07 2 5 3 2 s
08 0 3 2 7 y
09 1 2 8 1 g
10 6 1 3 2 r
11 6 0 2 4 w
12 0 0 12 0 G
13 2 8 1 1 c
14 3 0 9 0 R
15 1 0 4 7 k
16 6 1 5 0 r
17 5 1 5 1 r
18 2 10 0 0 C
19 2 5 5 0 s
20 5 0 6 1 r
Type: Heterodimer
Binding TFs: Q02650 ('Paired box' domain, Paired-box protein 2 C terminal)
Q02650
Binding Sites: MA0014.1.1
MA0014.1.10
MA0014.1.11
MA0014.1.12
MA0014.1.2
MA0014.1.3
MA0014.1.4
MA0014.1.5
MA0014.1.6
MA0014.1.7
MA0014.1.8
MA0014.1.9
Publications: Czerny T., Schaffner G., Busslinger M. DNA sequence recognition by Pax proteins: bipartite structure of the paired domain and its binding site. Genes Dev. 7:2048-2061 (1993). [Pubmed]

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