DNA Binding Motif

Accessions: 1gxp_AB (3D-footprint 20231221)
Names: PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: PhoB effector domain in complex with pho box DNA.
Length: 19
Consensus: CCntGACAnCTTTnnGACA
Weblogo:
PSSM: P0 A C G T
01 9 75 6 6 C
02 9 75 6 6 C
03 24 24 24 24 n
04 16 13 13 54 t
05 3 0 89 4 G
06 96 0 0 0 A
07 0 96 0 0 C
08 90 3 0 3 A
09 24 24 24 24 n
10 0 96 0 0 C
11 0 0 0 96 T
12 9 6 6 75 T
13 0 0 0 96 T
14 24 24 24 24 n
15 24 24 24 24 n
16 9 3 78 6 G
17 96 0 0 0 A
18 0 96 0 0 C
19 96 0 0 0 A
Type: Heterodimer
Binding TFs: 1gxp_A (Transcriptional regulatory protein, C terminal)
1gxp_B (Transcriptional regulatory protein, C terminal)
Binding Sites: 1gxp_C
1gxp_D
Publications: Blanco AG., Sola M., Gomis-Ruth FX., Coll M. Tandem DNA recognition by PhoB, a two-component signal transduction transcriptional activator. Structure. 10(5):701-13 (2002). [Pubmed]

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