DNA Binding Motif

						

			
Accessions: Rarg_DBD_1 (HumanTF 1.0), MA0859.1 (JASPAR 2024)

			
Names: Rarg
Organisms: Mus musculus
Libraries: HumanTF 1.0 1, JASPAR 2024 2
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 4, HT-SELEX
Length: 16
Consensus: rRGGTCAAAAGGTCAa
Weblogo: 
PSSM: P0      A      C      G      T
01  12548   1655  11289   1309      r
02   7220    147   3074      5      R
03      3      0  12765      0      G
04      0      3  11969   1826      G
05     20     35     64  10030      T
06      3  12653     38     79      C
07   8844      2     15      0      A
08   9169     49    114    257      A
09   8864     13    618    353      A
10   9211      4    394      0      A
11      1      1  13267      3      G
12      0      2   9298   2628      G
13      6     40     51   9774      T
14      0  11730     67    105      C
15   9147      4     82      1      A
16  11044   4836   2470   5566      a
Type: Heterodimer
Binding TFs: Rarg_DBD (Zinc finger, C4 type (two domains))
P18911 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
P18911
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]


Bastien J, Rochette-Egly C. Nuclear retinoid receptors and the transcription of retinoid-target genes. Gene : (2004). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.