DNA Binding Motif

						

			
Accessions: CN0031.1 (JASPAR 2024)

			
Names: LM31
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 22
Consensus: yTTTTCATCTTCAAAGyrcTTt
Weblogo: 
PSSM: P0      A      C      G      T
01     41    251     48    118      y
02     28     86     19    325      T
03      9     20      4    425      T
04      9     23     12    414      T
05     25     40     16    377      T
06     13    377     16     52      C
07    386     25     18     29      A
08     10     17     15    416      T
09      9    347     17     85      C
10      8     19      2    429      T
11      9     13     17    419      T
12     15    406     14     23      C
13    429     19      5      5      A
14    415     12     23      8      A
15    438      1     11      8      A
16     28     11    397     22      G
17     58    207     39    154      y
18    223     57    130     48      r
19     53    279     44     82      c
20     36     48     13    361      T
21     35     41     20    362      T
22     26     82     49    301      t
			
Publications: Xie X, Mikkelsen T.S, Gnirke A, Lindblad-Toh K, Kellis M, Lander E.S. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences of the United States of America 104:7145-50 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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