DNA Binding Motif

Accessions: MA0350.1 (JASPAR 2024)
Names: TOD6
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 21
Consensus: akbcwyasCTCATCGcsyywk
Weblogo:
PSSM: P0 A C G T
01 362 188 218 230 a
02 144 213 369 273 k
03 101 261 370 266 b
04 239 327 206 226 c
05 369 116 235 278 w
06 212 366 133 288 y
07 649 50 96 203 a
08 67 396 436 98 s
09 20 784 193 1 C
10 2 29 46 921 T
11 2 991 2 3 C
12 975 0 1 21 A
13 1 1 18 978 T
14 0 978 1 18 C
15 52 19 869 57 G
16 135 655 186 22 c
17 181 300 383 135 s
18 232 282 109 376 y
19 187 280 111 421 y
20 306 213 172 308 w
21 201 150 320 327 k
Type: Heterodimer
Binding TFs: P34219 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
P34219
Publications: Newburger D.E, Bulyk M.L. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic acids research 37:D77-82 (2009). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.