DNA Binding Motif

Accessions: PB0164.1 (JASPAR 2018)
Names: Smad3_2
Organisms: Mus musculus
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: universal protein binding microarray (PBM)
Length: 17
Consensus: kmmgcCCCGCCacyyyb
Weblogo:
PSSM: P0 A C G T
01 15 13 25 47 k
02 32 29 15 25 m
03 26 41 11 22 m
04 21 22 35 22 g
05 17 51 8 24 c
06 5 76 9 10 C
07 5 79 12 4 C
08 0 94 3 2 C
09 4 5 89 2 G
10 0 91 2 6 C
11 3 94 1 2 C
12 64 14 11 11 a
13 24 39 18 19 c
14 21 27 9 43 y
15 9 45 21 25 y
16 18 27 15 40 y
17 10 25 37 28 b
Binding TFs: Q8BUN5 (MH1 domain, MH2 domain, Interferon-regulatory factor 3)
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

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