DNA Binding Motif

Accessions: 4ihy_B (3D-footprint 20231221)
Names: DNA-binding protein fis
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Fis bound to 27bp Inosine substituted DNA F29-dI (AAATTTGTTTGIICICTGAGCAAATTT)
Length: 6
Consensus: CAnACA
Weblogo:
PSSM: P0 A C G T
01 9 67 9 11 C
02 67 9 9 11 A
03 24 24 24 24 n
04 67 9 9 11 A
05 0 96 0 0 C
06 96 0 0 0 A
Binding TFs: 4ihy_B (Bacterial regulatory protein, Fis family)
Binding Sites: 4ihy_C
4ihy_D
Publications: Hancock S.P, Ghane T, Cascio D, Rohs R, Di Felice R, Johnson R.C. Control of DNA minor groove width and Fis protein binding by the purine 2-amino group. Nucleic acids research 41:6750-60 (2013). [Pubmed]

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