DNA Binding Motif

						

			
Accessions: pad_SOLEXA_5_FBgn0038418 (FlyZincFinger 1.0 )

			
Names: CG10309
Organisms: Drosophila melanogaster
Libraries: FlyZincFinger 1.0  1
1 Enuameh MS et al (2013) Global analysis of Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants. Genome Res. 23(6):928-40. doi: 10.1101/gr.151472.112 [Pubmed]
Length: 25
Consensus: mcmmmcamrvarmmarrAGGGGwAm
Weblogo: 
PSSM: P0      A      C      G      T
01    399    438    346    218      m
02    324    539    327    228      c
03    369    469    328    265      m
04    364    491    341    235      m
05    396    503    320    212      m
06    343    507    352    229      c
07    421    357    324    329      a
08    364    396    332    339      m
09    441    325    388    277      r
10    401    397    399    234      v
11    466    306    340    319      a
12    499    328    429    175      r
13    439    512    292    188      m
14    497    472    240    222      m
15    455    347    348    281      a
16    386    236    593    216      r
17    380    288    572    191      r
18   1106    164     13    148      A
19      2      0   1427      2      G
20      0      0   1431      0      G
21     90      0   1329     12      G
22     10      0   1354     67      G
23    816     97    114    404      w
24    974     97     46    314      A
25    324    404    279    150      m
Binding TFs: pad (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
			
Publications: Enuameh MS et al (2013) Global analysis of Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants. Genome Res. 23(6):928-40. doi: 10.1101/gr.151472.112 [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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