DNA Binding Motif

Accessions: MA0046.1 (JASPAR 2024)
Names: HNF1A
Organisms: Vertebrata, Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: COMPILED
Length: 14
Consensus: gGTTAATwwTTamc
Weblogo:
PSSM: P0 A C G T
01 5 0 14 2 g
02 1 0 20 0 G
03 1 0 0 20 T
04 1 0 0 20 T
05 20 0 0 1 A
06 16 2 1 2 A
07 1 0 0 20 T
08 8 2 4 7 w
09 14 0 1 6 w
10 2 0 0 19 T
11 0 4 0 17 T
12 13 1 3 4 a
13 8 8 3 2 m
14 5 13 0 3 c
Type: Heterodimer
Binding TFs: ABR09270 / P20823 (Homeobox domain, Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus, Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus, Hepatocyte nuclear factor 1 (HNF-1), N terminus)
P20823
Binding Sites: MA0046.1.1
MA0046.1.10
MA0046.1.11
MA0046.1.12
MA0046.1.13
MA0046.1.14
MA0046.1.15
MA0046.1.16
MA0046.1.17
MA0046.1.18
MA0046.1.19
MA0046.1.2
MA0046.1.20
MA0046.1.3
MA0046.1.4
MA0046.1.5
MA0046.1.6
MA0046.1.7
MA0046.1.8
MA0046.1.9
Publications: Tronche F, Ringeisen F, Blumenfeld M, Yaniv M, Pontoglio M. Analysis of the distribution of binding sites for a tissue-specific transcription factor in the vertebrate genome. Journal of molecular biology 266:231-45 (1997). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.