DNA Binding Motif

Accessions: ems (DrosophilaTF 1.1)
Names: ems
Organisms: Drosophila melanogaster
Libraries: DrosophilaTF 1.1 1
1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed]
Length: 13
Consensus: AAnTnTAATGACA
Weblogo:
PSSM: P0 A C G T
01 1 0 0 0 A
02 1 0 0 0 A
03 0.25 0.25 0.25 0.25 n
04 0 0 0 1 T
05 0.25 0.25 0.25 0.25 n
06 0 0 0 1 T
07 1 0 0 0 A
08 1 0 0 0 A
09 0 0 0 1 T
10 0 0 1 0 G
11 1 0 0 0 A
12 0 1 0 0 C
13 1 0 0 0 A
Binding TFs: ems (Homeobox domain)
Publications: Taylor H. S. A regulatory element of the spiracles homeobox gene is composed of three distinct conserved regions that bind regulatory proteins.. Mol. Reprod. Dev. 49:246-253 (1998). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.