DNA Binding Motif

						

			
Accessions: MA1267.1 (JASPAR 2024), M0249 (AthalianaCistrome v4_May2016)

			
Names: AT5G66940, DOF5.8, AT5G66940.DAP, T22406;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 29
Consensus: wttttttttytTTTtaCTTTTtttttttw
Weblogo: 
PSSM: P0      A      C      G      T
01    151    116     72    258      w
02    138    137     62    260      t
03    132     95     93    277      t
04     91    132     49    325      t
05    105    142     42    308      t
06     84    104     41    368      t
07    102    114     33    348      t
08    146    119     37    295      t
09    134    149     62    252      t
10    107    184     32    274      y
11     64    139     26    368      t
12     89     39     32    437      T
13     72     44     35    446      T
14     20    116     25    436      T
15    113    105     27    352      t
16    290     79    107    121      a
17      1    585     10      1      C
18      1     21      1    574      T
19      0      0      0    597      T
20      0      1      0    596      T
21    105     22      1    469      T
22     57     78     86    376      t
23    122    138    120    217      t
24    141    142    103    211      t
25    133    108     61    295      t
26    124    119     69    285      t
27    108    107     81    301      t
28    147    104     54    292      t
29    182     82     50    283      w
Type: Heterodimer
Binding TFs: Q9FGD6 / T22406 (Dof domain, zinc finger)
Q9FGD6
Binding Sites: MA1267.1.1
MA1267.1.10
MA1267.1.11
MA1267.1.12
MA1267.1.13
MA1267.1.14
MA1267.1.15
MA1267.1.16
MA1267.1.17
MA1267.1.18
MA1267.1.19
MA1267.1.2
MA1267.1.20
MA1267.1.3
MA1267.1.4
MA1267.1.5
MA1267.1.6
MA1267.1.7
MA1267.1.8
MA1267.1.9
			
Publications: Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.