DNA Binding Motif

Accessions: MA1200.1 (JASPAR 2018), M0485 (AthalianaCistrome v4_May2016)
Names: AGL25, AGL25.DAP, T22931;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1, AthalianaCistrome v4_May2016 2
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 18
Consensus: wcTTTCCwtwTttrgaaa
Weblogo:
PSSM: P0 A C G T
01 124 18 19 69 w
02 22 147 48 13 c
03 4 8 0 218 T
04 0 0 0 230 T
05 7 0 0 223 T
06 0 230 0 0 C
07 0 210 0 20 C
08 108 14 3 105 w
09 55 13 10 152 t
10 85 8 6 131 w
11 52 12 3 163 T
12 56 35 22 117 t
13 46 32 50 102 t
14 68 0 141 21 r
15 11 17 154 48 g
16 120 43 16 51 a
17 149 20 20 41 a
18 147 24 27 32 a
Binding TFs: T22931 / Q9S7Q7 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
Publications: Tang W., Perry S. E. Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study.. J. Biol. Chem. 278:28154-28159 (2003). [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

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