DNA Binding Motif
| Accessions: | Hpr (DBTBS 1.0) |
| Names: | Hpr |
| Organisms: | Bacillus subtilis |
| Libraries: | DBTBS 1.0 1 1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed] |
| Length: | 9 |
| Consensus: | rATATymyT |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.59 0 0.41 0 r 02 0.79 0.10 0.10 0 A 03 0 0.11 0 0.89 T 04 1 0 0 0 A 05 0.05 0 0.11 0.84 T 06 0.03 0.34 0 0.62 y 07 0.67 0.33 0 0 m 08 0.04 0.33 0 0.63 y 09 0 0 0.23 0.77 T |
| Binding TFs: | Hpr (PTS HPr component phosphorylation site) |
| Binding Sites: | aprE_3 aprE_4 aprE_5 aprE_6 epr_1 nprE_1 nprE_2 sinI_2 sinI_3 yclF_1 yclF_2 |
| Publications: | Ferrari E, Howard S.M, Hoch J.A. Effect of stage 0 sporulation mutations on subtilisin expression. Journal of bacteriology 166:173-9 (1986). [Pubmed] Higerd T.B, Hoch J.A, Spizizen J. Hyperprotease-producing mutants of Bacillus subtilis. Journal of bacteriology 112:1026-8 (1972). [Pubmed] Henner D.J, Ferrari E, Perego M, Hoch J.A. Location of the targets of the hpr-97, sacU32(Hy), and sacQ36(Hy) mutations in upstream regions of the subtilisin promoter. Journal of bacteriology 170:296-300 (1988). [Pubmed] Kallio P.T, Fagelson J.E, Hoch J.A, Strauch M.A. The transition state regulator Hpr of Bacillus subtilis is a DNA-binding protein. The Journal of biological chemistry 266:13411-7 (1991). [Pubmed] Kodgire P, Dixit M, Rao K.K. ScoC and SinR negatively regulate epr by corepression in Bacillus subtilis. Journal of bacteriology 188:6425-8 (2006). [Pubmed] Shafikhani S.H, Mandic-Mulec I, Strauch M.A, Smith I, Leighton T. Postexponential regulation of sin operon expression in Bacillus subtilis. Journal of bacteriology 184:564-71 (2002). [Pubmed] Caldwell R, Sapolsky R, Weyler W, Maile R.R, Causey S.C, Ferrari E. Correlation between Bacillus subtilis scoC phenotype and gene expression determined using microarrays for transcriptome analysis. Journal of bacteriology 183:7329-40 (2001). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.