DNA Binding Motif

Accessions: 3pvp_B (3D-footprint 20231221)
Names: Chromosomal replication initiator protein dnaA
Organisms: Mycobacterium tuberculosis, strain ATCC 25177 / H37Ra
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNA
Length: 9
Consensus: TTATCCACA
Weblogo:
PSSM: P0 A C G T
01 10 7 5 74 T
02 11 0 5 80 T
03 80 5 6 5 A
04 5 5 6 80 T
05 0 91 0 5 C
06 0 91 0 5 C
07 80 6 5 5 A
08 0 96 0 0 C
09 96 0 0 0 A
Binding TFs: 3pvp_B (Bacterial dnaA protein helix-turn-helix)
Binding Sites: 3pvp_E
3pvp_F
Publications: Tsodikov O.V, Biswas T. Structural and thermodynamic signatures of DNA recognition by Mycobacterium tuberculosis DnaA. Journal of molecular biology 410:461-76 (2011). [Pubmed]

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