DNA Binding Motif

						

			
Accessions: ZBED1_DBD (HumanTF 1.0), MA0749.1 (JASPAR 2024)

			
Names: ZBED1
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1, JASPAR 2024 2
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3, HT-SELEX
Length: 13
Consensus: cTrTCGCGACATr
Weblogo: 
PSSM: P0      A      C      G      T
01   1153   2613    591    711      c
02    441     22     56   5321      T
03   3841     15   2065      8      r
04      6      8      0   5510      T
05      0   5373      6     18      C
06    127      3   5979      2      G
07      4   5357      0    110      C
08      4      4   6013      0      G
09   5326      9     12      0      A
10      6   4330      0    865      C
11   5276     11     10    144      A
12    118    273    635   5055      T
13   3123    270   1876    608      r
Type: Heterodimer
Binding TFs: ZBED1_DBD (BED zinc finger)
O96006 (BED zinc finger, hAT family dimerisation domain)
O96006
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]


Ohshima N, Takahashi M, Hirose F. Identification of a human homologue of the DREF transcription factor with a potential role in regulation of the histone H1 gene. J Biol Chem 278:22928-38 (2003). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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