DNA Binding Motif

						

			
Accessions: EEAD0005 (EEADannot 2023-12-22)

			
Names: LEAFY
Organisms: Arabidopsis thaliana
Libraries: EEADannot 2023-12-22 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 19
Consensus: wdrwCCAayGGwCmAwaww
Weblogo: 
PSSM: P0      A      C      G      T
01    116     57     55    144      w
02    111     26    128    107      d
03    109     11    235     17      r
04    192     24      5    151      w
05     10    349      3     10      C
06      5    342      3     22      C
07    325      8     24     15      A
08    249     18     43     62      a
09     49    151      6    166      y
10     30      2    333      7      G
11     10      2    353      7      G
12    143      6     15    208      w
13      8    327      2     35      C
14    125    223      3     21      m
15    305     16     24     27      A
16    210     13      5    144      w
17    221     39     62     50      a
18    145     65     66     96      w
19    116     80     65    111      w
Binding TFs: LEAFY (Floricaula / Leafy protein)
			
Publications: Moyroud E, Minguet E.G, Ott F, Yant L, Posé D, Monniaux M, Blanchet S, Bastien O, Thévenon E, Weigel D, Schmid M, Parcy F. Prediction of regulatory interactions from genome sequences using a biophysical model for the Arabidopsis LEAFY transcription factor. The Plant cell 23:1293-306 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.