DNA Binding Motif
| Accessions: | UP00350A_1 (UniPROBE 20160601) |
| Names: | Asg1, Putative 108.8 kDa transcriptional regulatory protein in FKH1-STH1 intergenic region, YIL130W |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | yCCGGsmkagwyCCGG |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.22 0.36 0.07 0.35 y 02 0.05 0.85 0.02 0.07 C 03 0.02 0.89 0.08 0.01 C 04 0.01 0.10 0.88 0.02 G 05 0.05 0.07 0.84 0.04 G 06 0.23 0.42 0.28 0.06 s 07 0.26 0.50 0.06 0.17 m 08 0.04 0.06 0.65 0.25 k 09 0.48 0.07 0.22 0.23 a 10 0.06 0.07 0.65 0.22 g 11 0.35 0.06 0.08 0.51 w 12 0.11 0.32 0.14 0.43 y 13 0.04 0.84 0.07 0.05 C 14 0.02 0.88 0.10 0.01 C 15 0.01 0.08 0.89 0.02 G 16 0.07 0.02 0.85 0.05 G |
| Binding TFs: | UP00350A (Fungal Zn(2)-Cys(6) binuclear cluster domain) |
| Binding Sites: | ACATCCGG AGTTCCGG ATATCCGG ATCCGGAT CATCCGGC CATCCGGG CCCGGATA CCCGGGTA CCGGAACG CCGGATAA CCGGATAC CCGGGTAA GCCGGATA GTTCCGGA TATCCGGA TCCCGGAA TCCGGAAA TTCCGGAA CCGGATCG TACCCGGA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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