DNA Binding Motif

						

			
Accessions: MA1381.1 (JASPAR 2024), M0334 (AthalianaCistrome v4_May2016)

			
Names: AT3G46070, AT3G46070.DAP, T11523;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: yywhyyTCACTcthh
Weblogo: 
PSSM: P0      A      C      G      T
01     45     53     14     90      y
02     27     91     15     69      y
03     78     47      8     69      w
04     63     55     16     68      h
05     18     79     14     91      y
06     48     64     19     71      y
07      9      0      0    193      T
08      0    202      0      0      C
09    200      0      0      2      A
10      2    200      0      0      C
11      0      0      0    202      T
12     14    131     22     35      c
13     42     44     10    106      t
14     59     78     13     52      h
15     63     65     16     58      h
Type: Heterodimer
Binding TFs: Q9LX86 / T11523 (C2H2-type zinc finger)
Q9LX86
			
Publications: Hichri I, Muhovski Y, Žižkova E, Dobrev PI, Franco-Zorrilla JM, Solano R, Lopez-Vidriero I, Motyka V, Lutts S. The Solanum lycopersicum Zinc Finger2 cysteine-2/histidine-2 repressor-like transcription factor regulates development and tolerance to salinity in tomato and Arabidopsis. Plant Physiol 164:1967-90 (2014). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.