DNA Binding Motif

Accessions: 1h9t_AB (3D-footprint 20231221)
Names: FATTY ACID METABOLISM REGULATOR PROTEIN
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: FADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM E. COLI IN COMPLEX WITH FADB OPERATOR
Length: 11
Consensus: TGGTnCgACCA
Weblogo:
PSSM: P0 A C G T
01 10 10 10 66 T
02 0 0 96 0 G
03 0 0 96 0 G
04 5 10 10 71 T
05 24 24 24 24 n
06 0 96 0 0 C
07 12 10 58 16 g
08 85 0 10 1 A
09 0 96 0 0 C
10 0 96 0 0 C
11 80 5 6 5 A
Type: Heterodimer
Binding TFs: 1h9t_A (Bacterial regulatory proteins, gntR family, FadR C-terminal domain)
1h9t_B (Bacterial regulatory proteins, gntR family, FadR C-terminal domain)
Binding Sites: 1h9t_X
1h9t_Y
Publications: van Aalten D.M, DiRusso C.C, Knudsen J. The structural basis of acyl coenzyme A-dependent regulation of the transcription factor FadR. The EMBO journal 20:2041-50 (2001). [Pubmed]

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