DNA Binding Motif

Accessions: MA0630.1 (JASPAR 2024)
Names: SHOX
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 8
Consensus: yTAATTrr
Weblogo:
PSSM: P0 A C G T
01 179 301 162 357 y
02 74 30 9 886 T
03 852 48 55 45 A
04 991 2 5 2 A
05 15 15 27 943 T
06 98 50 84 768 T
07 416 48 424 111 r
08 301 187 379 133 r
Type: Heterodimer
Binding TFs: O15266 (Homeobox domain, OAR domain)
O15266
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

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