DNA Binding Motif

Accessions: MntR (DBTBS 1.0)
Names: MntR
Organisms: Bacillus subtilis
Libraries: DBTBS 1.0 1
1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed]
Length: 19
Consensus: AwTTTGCmTkArGGAAACT
Weblogo:
PSSM: P0 A C G T
01 1 0 0 0 A
02 0.50 0 0 0.50 w
03 0 0 0 1 T
04 0 0 0 1 T
05 0 0 0 1 T
06 0 0 1 0 G
07 0 1 0 0 C
08 0.37 0.63 0 0 m
09 0 0 0 1 T
10 0 0 0.63 0.37 k
11 1 0 0 0 A
12 0.37 0 0.63 0 r
13 0 0 1 0 G
14 0 0 1 0 G
15 1 0 0 0 A
16 1 0 0 0 A
17 1 0 0 0 A
18 0 1 0 0 C
19 0 0 0 1 T
Binding TFs: MntR (MarR family, Iron dependent repressor, N-terminal DNA binding domain, Iron dependent repressor, metal binding and dimerisation domain)
Binding Sites: mntA
mntH
Publications: Que Q, Helmann J.D. Manganese homeostasis in Bacillus subtilis is regulated by MntR, a bifunctional regulator related to the diphtheria toxin repressor family of proteins. Molecular microbiology 35:1454-68 (2000). [Pubmed]

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