DNA Binding Motif
| Accessions: | bab1 (DrosophilaTF 1.1) |
| Names: | bab1 |
| Organisms: | Drosophila melanogaster |
| Libraries: | DrosophilaTF 1.1 1 1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed] |
| Length: | 12 |
| Consensus: | wawwwWTwwtkk |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.2727 0 0.0909 0.6364 w 02 0.5 0.2 0.1 0.2 a 03 0.6667 0 0 0.3333 w 04 0.6 0 0 0.4 w 05 0.3333 0.1111 0 0.5556 w 06 0.7 0 0 0.3 W 07 0.2222 0 0 0.7778 T 08 0.6 0 0 0.4 w 09 0.5556 0 0 0.4444 w 10 0.2 0.1 0.1 0.6 t 11 0.1111 0.1111 0.3333 0.4444 k 12 0 0 0.6667 0.3333 k |
| Binding TFs: | bab1 (BTB/POZ domain, helix-turn-helix, Psq domain) |
| Binding Sites: | bab1_10S6-1 bab1_10S6-2 bab1_11S6-1 bab1_11S6-2 bab1_12S6 bab1_14S6-2 bab1_14S6-3 bab1_15S6 bab1_16S6-1 bab1_16S6-2 bab1_17S6-1 bab1_19S6-1 bab1_1S6-1 bab1_1S6-2 bab1_23S6-2 bab1_24S6-1 bab1_27S6-2 bab1_28S6 bab1_29S6-1 bab1_2S6-1 bab1_3S6 bab1_4S6 bab1_5S6 bab1_6S6 bab1_7S6-1 bab1_7S6-3 bab1_9S6 |
| Publications: | Lours C, Bardot O, Godt D, Laski F.A, Couderc J.L. The Drosophila melanogaster BTB proteins bric à brac bind DNA through a composite DNA binding domain containing a pipsqueak and an AT-Hook motif. Nucleic acids research 31:5389-98 (2003). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.