DNA Binding Motif

Accessions: 2vy2_A (3D-footprint 20231221)
Names: PROTEIN LEAFY
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AG-I promoter
Length: 9
Consensus: tGGtnnnnA
Weblogo:
PSSM: P0 A C G T
01 13 13 13 57 t
02 0 0 96 0 G
03 0 0 96 0 G
04 13 13 16 54 t
05 24 24 24 24 n
06 24 24 24 24 n
07 24 24 24 24 n
08 24 24 24 24 n
09 96 0 0 0 A
Binding TFs: 2vy2_A (Floricaula / Leafy protein)
Binding Sites: 2vy2_W
Publications: Hamès C, Ptchelkine D, Grimm C, Thevenon E, Moyroud E, Gérard F, Martiel J.L, Benlloch R, Parcy F, Müller C.W. Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins. The EMBO journal 27:2628-37 (2008). [Pubmed]

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