DNA Binding Motif

Accessions: 2hdc_A (3D-footprint 20231221)
Names: PROTEIN (TRANSCRIPTION FACTOR)
Organisms: Rattus norvegicus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: STRUCTURE OF TRANSCRIPTION FACTOR GENESIS/DNA COMPLEX
Length: 10
Consensus: TGTTATttta
Weblogo:
PSSM: P0 A C G T
01 8 8 8 72 T
02 2 4 88 2 G
03 0 0 0 96 T
04 2 1 1 92 T
05 96 0 0 0 A
06 0 0 0 96 T
07 20 20 20 36 t
08 10 10 13 63 t
09 10 13 10 63 t
10 38 20 19 19 a
Binding TFs: 2hdc_A (Fork head domain)
Binding Sites: 2hdc_B
2hdc_C
Publications: Jin C, Marsden I, Chen X, Liao X. Dynamic DNA contacts observed in the NMR structure of winged helix protein-DNA complex. Journal of molecular biology 289:683-90 (1999). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.