DNA Binding Motif

Accessions: UP00020A_1 (UniPROBE 20160601)
Names: activating transcription factor 1, Atf1, Cyclic AMP-dependent transcription factor ATF-1, TCR-ATF1
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 16
Consensus: ackrTGACGTCAycra
Weblogo:
PSSM: P0 A C G T
01 0.38 0.14 0.24 0.24 a
02 0.14 0.42 0.20 0.25 c
03 0.16 0.10 0.41 0.33 k
04 0.47 0.10 0.39 0.04 r
05 0.01 0.03 0.01 0.96 T
06 0.01 0.01 0.86 0.11 G
07 0.96 0 0.01 0.02 A
08 0 0.95 0 0.04 C
09 0.04 0 0.95 0 G
10 0.02 0.01 0 0.96 T
11 0.11 0.86 0.01 0.01 C
12 0.96 0.01 0.03 0.01 A
13 0.05 0.36 0.14 0.45 y
14 0.23 0.45 0.14 0.18 c
15 0.26 0.10 0.49 0.14 r
16 0.35 0.18 0.24 0.23 a
Binding TFs: UP00020A (bZIP transcription factor, Basic region leucine zipper)
Binding Sites: CTACGTCA
TGACGTAA
AACGTCAT
AATGACGT
ACGTCACA
ACGTCACC
ACGTCACG
ACGTCACT
ACGTCATA
ACGTCATC
ACGTCATG
ATGACGTA
ATGACGTC
ATGACGTG
ATTACGTA
CACGTCAC
CGTCATAA
CGTCATCA
GTGACGTA
TCACGTCA
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.