DNA Binding Motif

Accessions: MA1202.1 (JASPAR 2018)
Names: AGL55
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: DAP-seq
Length: 6
Consensus: TCACCA
01 0 5 4 81 T
02 0 90 0 0 C
03 90 0 0 0 A
04 0 90 0 0 C
05 0 90 0 0 C
06 90 0 0 0 A
Binding TFs: Q9C960 (SRF-type transcription factor (DNA-binding and dimerisation domain))
Publications: Tang W., Perry S. E. Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study.. J. Biol. Chem. 278:28154-28159 (2003). [Pubmed]


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