DNA Binding Motif

Accessions: 1ais_AB (3D-footprint 20210203)
Names: PROTEIN (TATA-BINDING PROTEIN)
Organisms: Pyrococcus woesei
Libraries: 3D-footprint 20210203 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: TATA-BINDING PROTEIN/TRANSCRIPTION FACTOR (II)B/TATA-BOX COMPLEX FROM PYROCOCCUS WOESEI
Length: 8
Consensus: TTTTTAAA
Weblogo:
PSSM: P0 A C G T
01 2 9 9 76 T
02 0 0 0 96 T
03 0 0 0 96 T
04 0 0 0 96 T
05 0 9 1 86 T
06 67 9 11 9 A
07 96 0 0 0 A
08 67 9 9 11 A
Binding TFs: 1ais_A (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 1ais_C
1ais_E
Publications: Kosa P.F, Ghosh G, DeDecker B.S, Sigler P.B. The 2.1-A crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box. Proceedings of the National Academy of Sciences of the United States of America 94:6042-7 (1997). [Pubmed]

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