DNA Binding Motif

Accessions: 4lup_A (3D-footprint 20231221)
Names: RNA polymerase sigma factor
Organisms: Escherichia coli
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the complex formed by region of E. coli sigmaE bound to its -10 element non template strand
Length: 7
Consensus: tGTCnaA
Weblogo:
PSSM: P0 A C G T
01 14 14 14 54 t
02 0 0 96 0 G
03 0 0 0 96 T
04 0 96 0 0 C
05 24 24 24 24 n
06 60 12 12 12 a
07 96 0 0 0 A
Binding TFs: 4lup_A (Sigma-70 region 2 )
Binding Sites: 4lup_B
Publications: Campagne S, Marsh M.E, Capitani G, Vorholt J.A, Allain F.H. Structural basis for -10 promoter element melting by environmentally induced sigma factors. Nature structural & molecular biology 21:269-76 (2014). [Pubmed]

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