DNA Binding Motif

Accessions: 5gnj_GIN (3D-footprint 20231221)
Names: Transcription factor MYC2
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of a transcription factor and DNA complex
Length: 7
Consensus: CaCGtGt
Weblogo:
PSSM: P0 A C G T
01 0 92 3 1 C
02 59 13 8 16 a
03 4 80 4 8 C
04 3 19 67 7 G
05 13 8 13 62 t
06 0 2 93 1 G
07 19 20 19 38 t
Type: Heterodimer
Binding TFs: 5gnj_G / 5gnj_N (Helix-loop-helix DNA-binding domain)
5gnj_I (Helix-loop-helix DNA-binding domain)
Binding Sites: 5gnj_K
5gnj_L
Publications: Lian TF, Xu YP, Li LF, Su XD. Crystal Structure of Tetrameric Arabidopsis MYC2 Reveals the Mechanism of Enhanced Interaction with DNA. Cell Rep 19:1334-1342 (2017). [Pubmed]

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