DNA Binding Motif

						

			
Accessions: MA1034.1 (JASPAR 2024)

			
Names: Os05g0497200
Organisms: Oryza sativa Japonica Group
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 8
Consensus: CGsCGCCr
Weblogo: 
PSSM: P0      A      C      G      T
01      3    990      3      3      C
02      3      3    990      3      G
03      3    661    332      3      s
04      3    990      3      3      C
05      3      3    990      3      G
06      3    990      3      3      C
07      3    990      3      3      C
08    495      5    495      5      r
Type: Heterodimer
Binding TFs: Q75K84 (AP2 domain)
Q75K84
			
Publications: Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.