DNA Binding Motif
| Accessions: | SPI1_full (HumanTF 1.0), MA0080.4 (JASPAR 2024) |
| Names: | SPI1 |
| Organisms: | Homo sapiens |
| Libraries: | HumanTF 1.0 1, JASPAR 2024 2 1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | Site type: monomeric; SELEX cycle: 3, HT-SELEX |
| Length: | 14 |
| Consensus: | aAAAAGmGGAAGTw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 3946 555 1142 476 a 02 4976 26 377 82 A 03 5053 2 8 30 A 04 5044 0 0 99 A 05 4868 4 15 524 A 06 49 246 5255 2 G 07 1793 4068 727 1 m 08 29 1 5300 2 G 09 0 1 5330 0 G 10 5105 2 0 1 A 11 5122 1 1 5 A 12 0 184 5246 1 G 13 21 69 12 4962 T 14 2535 288 733 1439 w |
| Type: | Heterodimer |
| Binding TFs: | P17947 (Ets-domain) SPI1_full (Ets-domain) P17947 |
| Publications: | Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed] Portales-Casamar E, Kirov S, Lim J, Lithwick S, Swanson M.I, Ticoll A, Snoddy J, Wasserman W.W. PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation. Genome biology 8:R207 (2007). [Pubmed] |
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