DNA Binding Motif

						

			
Accessions: AgaR (RegulonDB 7.5)

			
Names: AgaR, AgaR DNA-binding transcriptional repressor
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 19
Consensus: CTTTCrTTTyvTTTykwTT
Weblogo: 
PSSM: P0      A      C      G      T
01      2      9      0      0      C
02      1      0      0     10      T
03      0      0      0     11      T
04      0      0      1     10      T
05      1      9      0      1      C
06      3      0      7      1      r
07      0      2      1      8      T
08      0      0      0     11      T
09      1      0      0     10      T
10      0      4      1      6      y
11      4      4      3      0      v
12      0      0      0     11      T
13      0      0      0     11      T
14      1      0      0     10      T
15      2      6      0      3      y
16      2      1      3      5      k
17      3      2      1      5      w
18      1      0      1      9      T
19      2      1      0      8      T
Binding TFs: ECK120008623 (DeoR C terminal sensor domain, DeoR-like helix-turn-helix domain, HTH domain)
Binding Sites: ECK120012517
ECK120012519
ECK120012521
ECK120012525
ECK120012527
ECK120012529
ECK120012531
ECK120012533
ECK120012535
ECK120015699
ECK120015701
			
	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.