DNA Binding Motif

Accessions: 6fzs_AB (3D-footprint 2022-04-03)
Names: Mothers against decapentaplegic homolog 5
Organisms: Homo sapiens
Libraries: 3D-footprint 2022-04-03 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Smad5-MH1 bound to the GGCGC site.
Length: 10
Consensus: aGkCGCGCCt
Weblogo:
PSSM: P0 A C G T
01 64 8 8 16 a
02 0 0 96 0 G
03 8 8 24 56 k
04 0 96 0 0 C
05 0 0 96 0 G
06 0 96 0 0 C
07 0 0 96 0 G
08 0 96 0 0 C
09 0 96 0 0 C
10 8 16 8 64 t
Type: Heterodimer
Binding TFs: 6fzs_A (MH1 domain)
6fzs_B (MH1 domain)
Binding Sites: 6fzs_C / 6fzs_D

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