DNA Binding Motif

Accessions: CN0065.1 (JASPAR 2024)
Names: LM65
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 20
Consensus: gcTcATTTGCATTTCAAArr
Weblogo:
PSSM: P0 A C G T
01 109 71 164 114 g
02 52 270 41 95 c
03 44 10 6 398 T
04 102 255 51 50 c
05 402 19 9 28 A
06 9 3 3 443 T
07 2 23 2 431 T
08 74 1 6 377 T
09 32 34 373 19 G
10 24 423 2 9 C
11 434 7 0 17 A
12 13 27 6 412 T
13 23 18 19 398 T
14 30 15 21 392 T
15 24 364 44 26 C
16 426 11 2 19 A
17 398 7 24 29 A
18 394 8 14 42 A
19 225 7 163 63 r
20 123 54 219 62 r
Publications: Xie X, Mikkelsen T.S, Gnirke A, Lindblad-Toh K, Kellis M, Lander E.S. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences of the United States of America 104:7145-50 (2007). [Pubmed]

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