DNA Binding Motif

						

			
Accessions: 3swp_ABCD (3D-footprint 2022-04-03)

			
Names: NAC domain-containing protein 19
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 2022-04-03 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: ANAC019 NAC domain in complex with DNA
Length: 16
Consensus: CgnTTCnAnnnCGAAG
Weblogo: 
PSSM: P0      A      C      G      T
01      0     96      0      0      C
02     13     14     56     13      g
03     24     24     24     24      n
04      0      0      0     96      T
05     15      8      4     69      T
06     13     67      8      8      C
07     24     24     24     24      n
08     96      0      0      0      A
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12      6     82      4      4      C
13      0      0     96      0      G
14     87      4      5      0      A
15     92      4      0      0      A
16      0      0     96      0      G
Type: Heterodimer
Binding TFs: 3swp_A (No apical meristem (NAM) protein)
3swp_B / 3swp_D (No apical meristem (NAM) protein)
3swp_C (No apical meristem (NAM) protein)
Binding Sites: 3swp_E
3swp_F
			
Publications: Welner D.H, Lindemose S, Grossmann J.G, Møllegaard N.E, Olsen A.N, Helgstrand C, Skriver K, Lo Leggio L. DNA binding by the plant-specific NAC transcription factors in crystal and solution: a firm link to WRKY and GCM transcription factors. The Biochemical journal 444:395-404 (2012). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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