DNA Binding Motif

Accessions: AGL1 (Athamap 20091028), MA0585.1 (JASPAR 2018)
Names: AGL1, SHP1
Organisms: Arabidopsis thaliana
Libraries: Athamap 20091028 1, JASPAR 2018 2
1 B├╝low L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed]
2 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: SELEX
Length: 18
Consensus: wtTdCCwwwwtgGGwAar
Weblogo:
PSSM: P0 A C G T
01 21 11 15 18 w
02 12 6 9 38 t
03 4 1 9 51 T
04 21 5 22 17 d
05 0 65 0 0 C
06 1 63 1 0 C
07 30 6 7 22 w
08 31 4 8 22 w
09 42 1 1 21 w
10 26 3 2 34 w
11 14 14 9 28 t
12 15 8 28 14 g
13 7 0 56 2 G
14 4 0 56 5 G
15 26 6 5 28 w
16 48 10 4 3 A
17 39 9 8 9 a
18 18 15 19 13 r
Binding TFs: P29381 / AGL1 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
Publications: Huang H., Tudor M., Su T., Zhang Y., Hu Y., Ma H. DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation.. Plant Cell 8:81-94 (1996). [Pubmed]

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