DNA Binding Motif

						

			
Accessions: AGL1 (Athamap 20091028), MA0585.1 (JASPAR 2024)

			
Names: AGL1, SHP1
Organisms: Arabidopsis thaliana
Libraries: Athamap 20091028 1, JASPAR 2024 2
1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009).  [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 18
Consensus: wtTdCCwwwwtgGGwAar
Weblogo: 
PSSM: P0      A      C      G      T
01     21     11     15     18      w
02     12      6      9     38      t
03      4      1      9     51      T
04     21      5     22     17      d
05      0     65      0      0      C
06      1     63      1      0      C
07     30      6      7     22      w
08     31      4      8     22      w
09     42      1      1     21      w
10     26      3      2     34      w
11     14     14      9     28      t
12     15      8     28     14      g
13      7      0     56      2      G
14      4      0     56      5      G
15     26      6      5     28      w
16     48     10      4      3      A
17     39      9      8      9      a
18     18     15     19     13      r
Type: Heterodimer
Binding TFs: AGL1 / P29381 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
P29381
			
Publications: Huang H., Tudor M., Su T., Zhang Y., Hu Y., Ma H. DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation.. Plant Cell 8:81-94 (1996). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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