DNA Binding Motif
| Accessions: | MA0065.2 (JASPAR 2024) |
| Names: | Pparg::Rxra |
| Organisms: | Mus musculus |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 15 |
| Consensus: | strGGgcArAGGkcA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 94 317 320 126 s 02 101 166 127 464 t 03 390 23 368 79 r 04 100 3 671 87 G 05 139 15 674 34 G 06 145 129 395 193 g 07 71 547 179 66 c 08 819 21 15 8 A 09 522 48 270 23 r 10 713 5 137 9 A 11 82 2 767 12 G 12 41 9 693 120 G 13 22 99 263 479 k 14 54 555 144 109 c 15 676 58 47 81 A |
| Type: | Heterodimer |
| Binding TFs: | P28700 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains), Nuclear/hormone receptor activator site AF-1) P37238 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains), PPAR gamma N-terminal region) P28700 P37238 |
| Binding Sites: | MA0065.2.1 MA0065.2.10 MA0065.2.11 MA0065.2.12 MA0065.2.13 MA0065.2.14 MA0065.2.15 MA0065.2.16 MA0065.2.17 MA0065.2.18 MA0065.2.19 MA0065.2.2 MA0065.2.20 MA0065.2.3 MA0065.2.4 MA0065.2.5 MA0065.2.6 MA0065.2.7 MA0065.2.8 MA0065.2.9 |
| Publications: | Nielsen R, Pedersen T.A, Hagenbeek D, Moulos P, Siersbaek R, Megens E, Denissov S, Børgesen M, Francoijs K.J, Mandrup S, Stunnenberg H.G. Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis. Genes & development 22:2953-67 (2008). [Pubmed] |
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