DNA Binding Motif

						

			
Accessions: CN0009.1 (JASPAR 2024)

			
Names: LM9
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 21
Consensus: tTCAGCACCayGGACAGckcC
Weblogo: 
PSSM: P0      A      C      G      T
01    171    215    302    755      t
02     31    211    117   1084      T
03     28   1346     21     48      C
04   1385     14     10     34      A
05     31     26   1368     18      G
06     86   1012    243    102      C
07   1353     25     28     37      A
08     24   1348     43     28      C
09     26   1318     22     77      C
10    777    202    186    278      a
11    244    383    181    635      y
12     59     21   1332     31      G
13     31     24   1376     12      G
14   1147    187     58     51      A
15     17   1152    208     66      C
16   1401      6     17     19      A
17     61     26   1340     16      G
18    198    867    189    189      c
19    309     58    613    463      k
20    201    828    302    112      c
21    148   1042     45    208      C
			
Publications: Xie X, Mikkelsen T.S, Gnirke A, Lindblad-Toh K, Kellis M, Lander E.S. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences of the United States of America 104:7145-50 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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