DNA Binding Motif

Accessions: 1lq1_AB (3D-footprint 20231221)
Names: Stage 0 sporulation protein A
Organisms: Bacillus subtilis, strain 168
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: DNA Complexed Structure of the Key Transcription Factor Initiating Development in Sporulation Bacteria
Length: 12
Consensus: CAAnnnnCGACA
Weblogo:
PSSM: P0 A C G T
01 0 96 0 0 C
02 96 0 0 0 A
03 67 11 9 9 A
04 24 24 24 24 n
05 24 24 24 24 n
06 24 24 24 24 n
07 24 24 24 24 n
08 0 96 0 0 C
09 0 0 96 0 G
10 67 11 9 9 A
11 0 96 0 0 C
12 67 11 9 9 A
Type: Heterodimer
Binding TFs: 1lq1_A (Sporulation initiation factor Spo0A C terminal)
1lq1_B (Sporulation initiation factor Spo0A C terminal)
Binding Sites: 1lq1_G
1lq1_H
Publications: Zhao H, Msadek T, Zapf J, Madhusudan , Hoch J.A, Varughese K.I. DNA complexed structure of the key transcription factor initiating development in sporulating bacteria. Structure (London, England : 1993) 10:1041-50 (2002). [Pubmed]

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