DNA Binding Motif

Accessions: 1vtl_E (3D-footprint 20210203)
Names: TATA BINDING PROTEIN (TBP)
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20210203 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CO-CRYSTAL STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE OF A TATA ELEMENT
Length: 8
Consensus: TATAAaAg
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 96 0 0 0 A
03 0 0 0 96 T
04 96 0 0 0 A
05 96 0 0 0 A
06 48 16 16 16 a
07 96 0 0 0 A
08 16 16 64 0 g
Binding TFs: 1vtl_E (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 1vtl_A
1vtl_B
Publications: Kim J.L, Nikolov D.B, Burley S.K. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature 365:520-7 (1993). [Pubmed]

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