DNA Binding Motif

						

			
Accessions: MA1114.1 (JASPAR 2024)

			
Names: PBX3
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 17
Consensus: gkbTGAGTGACAGgcrs
Weblogo: 
PSSM: P0      A      C      G      T
01   1595   1711   2192   1523      g
02   1510   1724   1934   1853      k
03   1320   1849   1928   1924      b
04    596    225    503   5697      T
05    228    227   6406    160      G
06   6426    125    214    256      A
07    335    788   4929    969      G
08    247    199    285   6290      T
09    146    242   6550     83      G
10   6164    108    604    145      A
11    150   6524    209    138      C
12   6091    129    425    376      A
13    369    412   5691    549      G
14    884   1377   4077    683      g
15   1251   2654   1591   1525      c
16   1869   1619   2068   1465      r
17   1495   1801   2217   1508      s
Type: Heterodimer
Binding TFs: P40426 (Homeobox domain, PBC domain, Homeobox KN domain)
P40426
Binding Sites: MA1114.1.1
MA1114.1.10
MA1114.1.11
MA1114.1.12
MA1114.1.13
MA1114.1.14
MA1114.1.15
MA1114.1.16
MA1114.1.17
MA1114.1.18
MA1114.1.19
MA1114.1.2
MA1114.1.20
MA1114.1.3
MA1114.1.4
MA1114.1.5
MA1114.1.6
MA1114.1.7
MA1114.1.8
MA1114.1.9
			
Publications: Shen W. F., Rozenfeld S., Kwong A., Kom ves L. G., Lawrence H. J., Largman C. HOXA9 forms triple complexes with PBX2 and MEIS1 in myeloid cells.. Mol. Cell. Biol. 19:3051-3061 (1999). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.