DNA Binding Motif

						

			
Accessions: 1au7_A (3D-footprint 20231221)

			
Names: PROTEIN PIT-1
Organisms: Rattus norvegicus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: PIT-1 MUTANT/DNA COMPLEX
Length: 11
Consensus: TGTATATaCAT
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02      0      0     96      0      G
03      6      6     12     72      T
04     96      0      0      0      A
05      0      0      0     96      T
06     96      0      0      0      A
07     12      6      8     70      T
08     57     14      6     19      a
09      0     96      0      0      C
10     76      0     12      8      A
11      0      0      0     96      T
Binding TFs: 1au7_A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
Binding Sites: 1au7_C
1au7_D
			
Publications: Jacobson E.M, Li P, Leon-del-Rio A, Rosenfeld M.G, Aggarwal A.K. Structure of Pit-1 POU domain bound to DNA as a dimer: unexpected arrangement and flexibility. Genes & development 11:198-212 (1997). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.