DNA Binding Motif

						

			
Accessions: GadW (RegulonDB 7.5)

			
Names: GadW, GadW DNA-binding transcriptional dual regulator
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 20
Consensus: mtrATwtTawyrttwtamwr
Weblogo: 
PSSM: P0      A      C      G      T
01      6     11      0      0      m
02      3      1      3     10      t
03      5      1      9      2      r
04     14      0      0      3      A
05      0      1      0     16      T
06      6      1      3      7      w
07      0      2      4     11      t
08      4      0      0     13      T
09      9      0      4      4      a
10      9      0      0      8      w
11      0      7      0     10      y
12      8      3      5      1      r
13      3      1      2     11      t
14      3      3      2      9      t
15      9      1      1      6      w
16      4      0      3     10      t
17      9      4      0      4      a
18     11      6      0      0      m
19      7      0      2      8      w
20      5      0      8      4      r
Binding TFs: ECK120006601 (Bacterial regulatory helix-turn-helix proteins, AraC family, Helix-turn-helix domain)
			
	
			


			

				

				
				
				
				

			

			

		

	
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