DNA Binding Motif
| Accessions: | MA1227.1 (JASPAR 2024), M0038 (AthalianaCistrome v4_May2016) |
| Names: | AT1G12630, ERF027, AT1G12630.DAP, T00109; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 21 |
| Consensus: | ygycryydyykyyrCCGACAm |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 132 222 79 167 y 02 147 128 176 149 g 03 131 206 102 161 y 04 106 256 95 143 c 05 180 98 197 125 r 06 108 229 97 166 y 07 140 235 75 150 y 08 178 79 188 155 d 09 139 204 76 181 y 10 111 258 56 175 y 11 106 83 189 222 k 12 78 234 27 261 y 13 19 316 18 247 y 14 256 1 339 4 r 15 0 595 0 5 C 16 0 600 0 0 C 17 0 0 600 0 G 18 462 47 1 90 A 19 0 600 0 0 C 20 454 2 124 20 A 21 191 183 94 132 m |
| Type: | Heterodimer |
| Binding TFs: | Q38Q39 / T00109 (AP2 domain) Q38Q39 |
| Binding Sites: | MA1227.1.1 MA1227.1.10 MA1227.1.11 MA1227.1.12 MA1227.1.13 MA1227.1.14 MA1227.1.15 MA1227.1.16 MA1227.1.17 MA1227.1.18 MA1227.1.19 MA1227.1.2 MA1227.1.20 MA1227.1.3 MA1227.1.4 MA1227.1.5 MA1227.1.6 MA1227.1.7 MA1227.1.8 / MA1227.1.9 |
| Publications: | Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed] O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.