DNA Binding Motif

						

			
Accessions: TBX19_DBD (HumanTF 1.0), MA0804.1 (JASPAR 2024)

			
Names: TBX19
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1, JASPAR 2024 2
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3, HT-SELEX
Length: 20
Consensus: wtTmrCACcTAgGTGygAaa
Weblogo: 
PSSM: P0      A      C      G      T
01  10247   5394   7955  15259      w
02   7363   4213   7813  21130      t
03    343   1043    221  44289      T
04  13892  24809   9198   2402      m
05  23300    456  12031   1889      r
06     76  31489     96    228      C
07  31154     50   1899     27      A
08   2675  29630   1507   5303      C
09   7973  15621   7432   4383      c
10   5455   4319   2831  40120      T
11  29962   1692   4295   4116      A
12   5373   7005  19801   8983      g
13   8127   1730  43953   3921      G
14     82   2983    265  43499      T
15    278     20  48757    128      G
16   2765  12022    694  26200      y
17   2535   6135  39866  13125      g
18  31606    111    858    235      A
19  19937   4953   4529   5442      a
20  16038   5961   5924   8228      a
Type: Heterodimer
Binding TFs: TBX19_DBD (T-box)
O60806 (T-box)
O60806
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]


Wilson V, Conlon FL. The T-box family. Genome Biol : (2002;3(6):REVIEWS3008.). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.