DNA Binding Motif

Accessions: MA0548.1 (JASPAR 2018)
Names: AGL15
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: ChIP-chip
Length: 15
Consensus: TTTCywtTTTtGKaw
Weblogo:
PSSM: P0 A C G T
01 9 5 3 133 T
02 4 10 6 130 T
03 18 0 11 121 T
04 0 144 2 4 C
05 4 99 1 46 y
06 63 20 18 49 w
07 15 23 16 96 t
08 33 4 3 110 T
09 3 0 0 147 T
10 15 9 8 118 T
11 14 14 27 95 t
12 18 0 124 8 G
13 2 0 110 38 K
14 54 30 30 36 a
15 80 10 11 49 w
Binding TFs: Q38847 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
Binding Sites: MA0548.1.1
MA0548.1.10
MA0548.1.11
MA0548.1.12
MA0548.1.13
MA0548.1.14
MA0548.1.15
MA0548.1.16
MA0548.1.17
MA0548.1.18
MA0548.1.19
MA0548.1.2
MA0548.1.20
MA0548.1.3
MA0548.1.4
MA0548.1.5
MA0548.1.6
MA0548.1.7
MA0548.1.8
MA0548.1.9
Publications: Tang W., Perry S. E. Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study.. J. Biol. Chem. 278:28154-28159 (2003). [Pubmed]

Disclaimer

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.