DNA Binding Motif

						

			
Accessions: 1ubd_C (3D-footprint 20231221)

			
Names: PROTEIN (YY1 ZINC FINGER DOMAIN)
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENT
Length: 12
Consensus: CAAAATGGtGAA
Weblogo: 
PSSM: P0      A      C      G      T
01      6     72      9      9      C
02     86      9      0      1      A
03     96      0      0      0      A
04     91      0      5      0      A
05     96      0      0      0      A
06      0      0      0     96      T
07      0      0     96      0      G
08      0      0     96      0      G
09     21      4      9     62      t
10      0      0     96      0      G
11     76      4      9      7      A
12     69      9      9      9      A
Binding TFs: 1ubd_C (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 1ubd_A
1ubd_B
			
Publications: Houbaviy H.B, Usheva A, Shenk T, Burley S.K. Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator. Proceedings of the National Academy of Sciences of the United States of America 93:13577-82 (1996). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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